Pages stage into ~/.gstack/.staging-ingest-*/ inside a repo whose .gitignore
is `*`, and gbrain import honours .gitignore — so it collected 0 files,
imported nothing, and the ingest still reported "written: N" from the STAGED
count while advancing state, meaning no future run ever retried. Three
layers now: (1) pass --include-gitignored (root cause); (2) if the installed
gbrain predates the flag, retry without it (subcommand --help is generic, so
the attempt is the only probe) with an upgrade pointer; (3) reconcile
gbrain's imported+unchanged accounting against the staged count and REFUSE
to advance state on a shortfall, naming the gitignore collision.
Fixes#2144, #2104.
Contributed by @gawievanblerk (PR #2560) and @Charles-Grant (PR #2486).
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Garry Tan