fix(db): repair responsible user migration timestamps (#9146)

## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The database migration layer keeps local and deployed instances
moving forward safely as schema/data contracts evolve.
> - The responsible-user backfill migration could make historical issues
look newly updated by bumping user-visible `updated_at` columns during a
backfill.
> - That timestamp churn can invalidate inbox/archive state and make old
work appear fresh even though no user-facing activity happened.
> - This pull request moves the responsible-user invariant migration
later in the current migration sequence, keeps it from touching
user-visible timestamps, and adds a repair sweep for databases that
already saw the timestamp bump.
> - The benefit is safer migration replay and regression coverage for
future backfills that might otherwise mutate visible timestamps.

## Linked Issues or Issue Description

No public GitHub issue exists. Inline bug report:

**Pre-submission checklist**

- [x] I have searched existing open and closed issues and this is not a
duplicate.
- [x] I am on the latest released version of Paperclip (or can reproduce
on `master`).
- [x] I have confirmed the error originates in Paperclip itself — not in
my agent adapter, API provider, or local configuration.

**What happened?**

A responsible-user migration backfill could update user-visible
`updated_at` columns while filling missing responsible-user data. That
makes historical issues/runs/routines appear newer even when no
user-facing activity happened.

**Expected behavior**

Responsible-user backfills should populate ownership metadata without
mutating user-visible recency fields, and databases already affected by
a timestamp sweep should be repairable.

**Steps to reproduce**

1. Start from current `master` with the responsible-user migration
sequence.
2. Apply migrations to a database containing historical issues, runs,
routines, and companies with older activity timestamps.
3. Replay the responsible-user invariant migration and inspect
user-visible `updated_at` values.

**Paperclip version or commit**

`master` at the PR base.

**Deployment mode**

Local dev (`pnpm dev`) and deployed instances using the same migrations.

**Installation method**

Built from source (`pnpm dev` / `pnpm build`).

**Agent adapter(s) involved**

- [x] Not adapter-specific (core bug)

**Database mode**

External Postgres and embedded development Postgres migration paths.

**Access context**

Board and agent-visible issue recency can both be affected.

**Relevant logs or output**

Covered by the added embedded-Postgres regression tests.

**Relevant config (if applicable)**

Not applicable.

**Additional context**

This PR adapts an extracted local migration fix onto the current master
migration sequence, where `0133` is already occupied.

**Privacy checklist**

- [x] I have reviewed all pasted output for PII (usernames, file paths,
API keys, tokens, company names) and redacted where necessary.

## What Changed

- Renumbered the responsible-user invariant migration onto the current
master migration sequence.
- Added a repair migration that detects broad timestamp sweeps and
restores safer `updated_at` values for issues, heartbeat runs, routines,
routine runs, and companies.
- Added focused embedded-Postgres regression coverage for the relocated
migration, repair migration, and updated-at backfill allowlist.

## Verification

- `pnpm --filter @paperclipai/db run check:migrations`
- `/srv/paperclip/home/paperclipai/paperclip/node_modules/.bin/vitest
run packages/db/src/client.test.ts -t "migration 0134|migration
0135|unallowlisted migration backfills"`

## Risks

Migration behavior is the main risk. The PR intentionally changes the
active migration sequence by removing the old responsible-user invariant
slot and replaying that work later with a repair migration. Reviewers
should confirm this matches the intended release/migration policy for
installations that may already have applied the earlier migration.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, GPT-5.5 coding agent with repository tool use and local
shell execution. Context window was not surfaced by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
This commit is contained in:
Dotta 2026-07-07 05:54:17 -05:00 committed by GitHub
parent 696c694a58
commit 0f08c2b526
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
4 changed files with 501 additions and 10 deletions

View File

@ -47,6 +47,10 @@ const migrationUpdatedAtUpdateAllowlist = new Map<string, ReadonlySet<string>>([
"0131_repair_run_responsible_user_context_refs.sql",
new Set(["heartbeat_runs"]),
],
[
"0135_repair_run_responsible_user_updated_at_sweep.sql",
new Set(["companies", "heartbeat_runs", "issues", "routine_runs", "routines"]),
],
]);
function findUserVisibleUpdatedAtBackfillViolations(
@ -614,7 +618,7 @@ describeEmbeddedPostgres("applyPendingMigrations", () => {
);
it(
"replays migration 0130 without bumping issue updated_at for inbox archives",
"replays migration 0134 without bumping issue updated_at for inbox archives",
async () => {
const connectionString = await createTempDatabase();
@ -623,7 +627,7 @@ describeEmbeddedPostgres("applyPendingMigrations", () => {
const sql = postgres(connectionString, { max: 1, onnotice: () => {} });
try {
const runResponsibleUserHash = await migrationHash(
"0130_run_responsible_user_invariant.sql",
"0134_run_responsible_user_invariant.sql",
);
await sql.unsafe(`
@ -708,7 +712,7 @@ describeEmbeddedPostgres("applyPendingMigrations", () => {
const pendingState = await inspectMigrations(connectionString);
expect(pendingState).toMatchObject({
status: "needsMigrations",
pendingMigrations: ["0130_run_responsible_user_invariant.sql"],
pendingMigrations: ["0134_run_responsible_user_invariant.sql"],
reason: "pending-migrations",
});
@ -746,6 +750,402 @@ describeEmbeddedPostgres("applyPendingMigrations", () => {
20_000,
);
it(
"replays migration 0135 to repair updated_at sweeps and no-op when clean",
async () => {
const connectionString = await createTempDatabase();
await applyPendingMigrations(connectionString);
const repairSweepHash = await migrationHash(
"0135_repair_run_responsible_user_updated_at_sweep.sql",
);
const sql = postgres(connectionString, { max: 1, onnotice: () => {} });
try {
await sql.unsafe(`
INSERT INTO "companies" ("id", "name", "issue_prefix", "created_at", "updated_at")
VALUES (
'00000000-0000-0000-0000-000000000240',
'Clean Migration Co',
'CLN134',
'2026-04-01T09:00:00.000Z',
'2026-04-02T09:00:00.000Z'
)
`);
await sql.unsafe(`
INSERT INTO "issues" ("id", "company_id", "title", "status", "created_at", "updated_at")
VALUES (
'00000000-0000-0000-0000-000000000241',
'00000000-0000-0000-0000-000000000240',
'Clean issue should not be touched',
'todo',
'2026-04-01T10:00:00.000Z',
'2026-04-02T10:00:00.000Z'
)
`);
await sql.unsafe(
`DELETE FROM "drizzle"."__drizzle_migrations" WHERE hash = '${repairSweepHash}'`,
);
} finally {
await sql.end();
}
await applyPendingMigrations(connectionString);
const afterCleanReplay = postgres(connectionString, { max: 1, onnotice: () => {} });
try {
const cleanRows = await afterCleanReplay.unsafe<{ updated_at: Date }[]>(`
SELECT "updated_at"
FROM "issues"
WHERE "id" = '00000000-0000-0000-0000-000000000241'
`);
expect(cleanRows[0]?.updated_at.toISOString()).toBe("2026-04-02T10:00:00.000Z");
await afterCleanReplay.unsafe(`
INSERT INTO "companies" ("id", "name", "issue_prefix", "created_at", "updated_at")
VALUES (
'00000000-0000-0000-0000-000000000250',
'Sweep Migration Co',
'SWP134',
'2026-01-01T00:00:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "agents" ("id", "company_id", "name", "role", "adapter_type", "created_at", "updated_at")
VALUES (
'00000000-0000-0000-0000-000000000251',
'00000000-0000-0000-0000-000000000250',
'Sweep Agent',
'general',
'process',
'2026-01-02T00:00:00.000Z',
'2026-01-02T00:00:00.000Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "issues" ("id", "company_id", "title", "status", "created_at", "updated_at")
SELECT
('10000000-0000-0000-0000-' || lpad(gs::text, 12, '0'))::uuid,
'00000000-0000-0000-0000-000000000250',
'Swept issue ' || gs::text,
'todo',
'2026-02-01T00:00:00.000Z'::timestamptz + (gs::text || ' minutes')::interval,
'2026-04-03T12:00:00.123456Z'
FROM generate_series(1, 101) AS gs
`);
await afterCleanReplay.unsafe(`
UPDATE "issues"
SET
"status" = 'done',
"completed_at" = '2026-04-03T12:00:00.123456Z'
WHERE "id" = '10000000-0000-0000-0000-000000000003'
`);
await afterCleanReplay.unsafe(`
INSERT INTO "issue_comments" ("id", "company_id", "issue_id", "body", "created_at", "updated_at")
VALUES (
'00000000-0000-0000-0000-000000000252',
'00000000-0000-0000-0000-000000000250',
'10000000-0000-0000-0000-000000000001',
'Latest pre-sweep activity',
'2026-03-01T15:30:00.000Z',
'2026-03-02T16:45:00.000Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "heartbeat_runs" (
"id",
"company_id",
"agent_id",
"status",
"started_at",
"finished_at",
"created_at",
"updated_at"
)
VALUES (
'00000000-0000-0000-0000-000000000253',
'00000000-0000-0000-0000-000000000250',
'00000000-0000-0000-0000-000000000251',
'completed',
'2026-02-10T10:00:00.000Z',
'2026-02-10T10:30:00.000Z',
'2026-02-10T09:55:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "heartbeat_runs" (
"id",
"company_id",
"agent_id",
"status",
"started_at",
"last_output_at",
"created_at",
"updated_at"
)
VALUES (
'00000000-0000-0000-0000-000000000256',
'00000000-0000-0000-0000-000000000250',
'00000000-0000-0000-0000-000000000251',
'running',
'2026-02-10T11:00:00.000Z',
'2026-04-03T12:00:00.123456Z',
'2026-02-10T10:55:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "routines" (
"id",
"company_id",
"title",
"last_triggered_at",
"last_enqueued_at",
"created_at",
"updated_at"
)
VALUES (
'00000000-0000-0000-0000-000000000254',
'00000000-0000-0000-0000-000000000250',
'Swept routine',
'2026-03-20T10:00:00.000Z',
'2026-03-21T11:00:00.000Z',
'2026-02-11T00:00:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "routines" (
"id",
"company_id",
"title",
"last_triggered_at",
"last_enqueued_at",
"created_at",
"updated_at"
)
VALUES (
'00000000-0000-0000-0000-000000000257',
'00000000-0000-0000-0000-000000000250',
'Same-timestamp active routine',
'2026-03-20T10:00:00.000Z',
'2026-04-03T12:00:00.123456Z',
'2026-02-11T00:00:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "routine_runs" (
"id",
"company_id",
"routine_id",
"source",
"status",
"completed_at",
"created_at",
"updated_at"
)
VALUES (
'00000000-0000-0000-0000-000000000255',
'00000000-0000-0000-0000-000000000250',
'00000000-0000-0000-0000-000000000254',
'schedule',
'completed',
'2026-02-12T12:00:00.000Z',
'2026-02-12T11:00:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "routine_runs" (
"id",
"company_id",
"routine_id",
"source",
"status",
"triggered_at",
"created_at",
"updated_at"
)
VALUES (
'00000000-0000-0000-0000-000000000258',
'00000000-0000-0000-0000-000000000250',
'00000000-0000-0000-0000-000000000257',
'schedule',
'running',
'2026-04-03T12:00:00.123456Z',
'2026-02-12T13:00:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "companies" ("id", "name", "issue_prefix", "created_at", "updated_at")
VALUES (
'00000000-0000-0000-0000-000000000260',
'Coincident Timestamp Co',
'CTS134',
'2026-01-05T00:00:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "agents" ("id", "company_id", "name", "role", "adapter_type", "created_at", "updated_at")
VALUES (
'00000000-0000-0000-0000-000000000261',
'00000000-0000-0000-0000-000000000260',
'Coincident Agent',
'general',
'process',
'2026-01-05T00:10:00.000Z',
'2026-01-05T00:10:00.000Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "issues" ("id", "company_id", "title", "status", "created_at", "updated_at")
VALUES (
'20000000-0000-0000-0000-000000000001',
'00000000-0000-0000-0000-000000000260',
'Coincident timestamp issue should not be touched',
'todo',
'2026-02-05T00:00:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(`
INSERT INTO "heartbeat_runs" (
"id",
"company_id",
"agent_id",
"status",
"started_at",
"finished_at",
"created_at",
"updated_at"
)
VALUES (
'00000000-0000-0000-0000-000000000262',
'00000000-0000-0000-0000-000000000260',
'00000000-0000-0000-0000-000000000261',
'completed',
'2026-02-05T10:00:00.000Z',
'2026-02-05T10:30:00.000Z',
'2026-02-05T09:55:00.000Z',
'2026-04-03T12:00:00.123456Z'
)
`);
await afterCleanReplay.unsafe(
`DELETE FROM "drizzle"."__drizzle_migrations" WHERE hash = '${repairSweepHash}'`,
);
} finally {
await afterCleanReplay.end();
}
await applyPendingMigrations(connectionString);
const afterRepair = postgres(connectionString, { max: 1, onnotice: () => {} });
try {
const repairedRows = await afterRepair.unsafe<{
subject: string;
updated_at: Date;
}[]>(`
SELECT 'company' AS subject, "updated_at"
FROM "companies"
WHERE "id" = '00000000-0000-0000-0000-000000000250'
UNION ALL
SELECT 'issue_with_comment' AS subject, "updated_at"
FROM "issues"
WHERE "id" = '10000000-0000-0000-0000-000000000001'
UNION ALL
SELECT 'issue_without_comment' AS subject, "updated_at"
FROM "issues"
WHERE "id" = '10000000-0000-0000-0000-000000000002'
UNION ALL
SELECT 'issue_with_state_activity' AS subject, "updated_at"
FROM "issues"
WHERE "id" = '10000000-0000-0000-0000-000000000003'
UNION ALL
SELECT 'heartbeat_run' AS subject, "updated_at"
FROM "heartbeat_runs"
WHERE "id" = '00000000-0000-0000-0000-000000000253'
UNION ALL
SELECT 'heartbeat_run_with_output' AS subject, "updated_at"
FROM "heartbeat_runs"
WHERE "id" = '00000000-0000-0000-0000-000000000256'
UNION ALL
SELECT 'other_company' AS subject, "updated_at"
FROM "companies"
WHERE "id" = '00000000-0000-0000-0000-000000000260'
UNION ALL
SELECT 'other_heartbeat_run' AS subject, "updated_at"
FROM "heartbeat_runs"
WHERE "id" = '00000000-0000-0000-0000-000000000262'
UNION ALL
SELECT 'other_issue' AS subject, "updated_at"
FROM "issues"
WHERE "id" = '20000000-0000-0000-0000-000000000001'
UNION ALL
SELECT 'routine' AS subject, "updated_at"
FROM "routines"
WHERE "id" = '00000000-0000-0000-0000-000000000254'
UNION ALL
SELECT 'routine_with_activity' AS subject, "updated_at"
FROM "routines"
WHERE "id" = '00000000-0000-0000-0000-000000000257'
UNION ALL
SELECT 'routine_run' AS subject, "updated_at"
FROM "routine_runs"
WHERE "id" = '00000000-0000-0000-0000-000000000255'
UNION ALL
SELECT 'routine_run_with_trigger' AS subject, "updated_at"
FROM "routine_runs"
WHERE "id" = '00000000-0000-0000-0000-000000000258'
ORDER BY subject
`);
const repaired = Object.fromEntries(
repairedRows.map((row) => [row.subject, row.updated_at.toISOString()]),
);
expect(repaired).toEqual({
company: "2026-01-01T00:00:00.000Z",
heartbeat_run: "2026-02-10T10:30:00.000Z",
heartbeat_run_with_output: "2026-04-03T12:00:00.123Z",
issue_with_comment: "2026-03-02T16:45:00.000Z",
issue_with_state_activity: "2026-04-03T12:00:00.123Z",
issue_without_comment: "2026-02-01T00:02:00.000Z",
other_company: "2026-04-03T12:00:00.123Z",
other_heartbeat_run: "2026-04-03T12:00:00.123Z",
other_issue: "2026-04-03T12:00:00.123Z",
routine: "2026-03-21T11:00:00.000Z",
routine_run_with_trigger: "2026-04-03T12:00:00.123Z",
routine_with_activity: "2026-04-03T12:00:00.123Z",
routine_run: "2026-02-12T12:00:00.000Z",
});
await afterRepair.unsafe(
`DELETE FROM "drizzle"."__drizzle_migrations" WHERE hash = '${repairSweepHash}'`,
);
} finally {
await afterRepair.end();
}
await applyPendingMigrations(connectionString);
const afterSecondRun = postgres(connectionString, { max: 1, onnotice: () => {} });
try {
const secondRunRows = await afterSecondRun.unsafe<{ updated_at: Date }[]>(`
SELECT "updated_at"
FROM "issues"
WHERE "id" = '10000000-0000-0000-0000-000000000001'
`);
expect(secondRunRows[0]?.updated_at.toISOString()).toBe("2026-03-02T16:45:00.000Z");
} finally {
await afterSecondRun.end();
}
},
20_000,
);
it(
"replays the run responsible user repair migration when heartbeat run issue refs are identifiers",
async () => {

View File

@ -0,0 +1,84 @@
DROP TABLE IF EXISTS "run_responsible_user_updated_at_sweeps";
--> statement-breakpoint
CREATE TEMP TABLE "run_responsible_user_updated_at_sweeps" ON COMMIT DROP AS
SELECT i."company_id", i."updated_at" AS "sweep_at"
FROM "issues" AS i
WHERE EXISTS (
SELECT 1
FROM "heartbeat_runs" AS h
WHERE h."company_id" = i."company_id"
AND h."updated_at" = i."updated_at"
)
AND EXISTS (
SELECT 1
FROM "companies" AS c
WHERE c."id" = i."company_id"
AND c."updated_at" = i."updated_at"
)
GROUP BY i."company_id", i."updated_at"
HAVING count(*) > 100;
--> statement-breakpoint
UPDATE "issues" AS i
SET "updated_at" = GREATEST(
i."created_at",
COALESCE(CASE WHEN i."started_at" <= sweep."sweep_at" THEN i."started_at" END, i."created_at"),
COALESCE(CASE WHEN i."completed_at" <= sweep."sweep_at" THEN i."completed_at" END, i."created_at"),
COALESCE(CASE WHEN i."cancelled_at" <= sweep."sweep_at" THEN i."cancelled_at" END, i."created_at"),
COALESCE(CASE WHEN i."monitor_wake_requested_at" <= sweep."sweep_at" THEN i."monitor_wake_requested_at" END, i."created_at"),
COALESCE(CASE WHEN i."monitor_last_triggered_at" <= sweep."sweep_at" THEN i."monitor_last_triggered_at" END, i."created_at"),
COALESCE(
(
SELECT max(GREATEST(c."created_at", c."updated_at"))
FROM "issue_comments" AS c
WHERE c."company_id" = i."company_id"
AND c."issue_id" = i."id"
AND c."created_at" <= sweep."sweep_at"
AND c."updated_at" <= sweep."sweep_at"
),
i."created_at"
)
)
FROM "run_responsible_user_updated_at_sweeps" AS sweep
WHERE i."company_id" = sweep."company_id"
AND i."updated_at" = sweep."sweep_at";
--> statement-breakpoint
UPDATE "heartbeat_runs" AS h
SET "updated_at" = GREATEST(
h."created_at",
COALESCE(CASE WHEN h."started_at" <= sweep."sweep_at" THEN h."started_at" END, h."created_at"),
COALESCE(CASE WHEN h."process_started_at" <= sweep."sweep_at" THEN h."process_started_at" END, h."created_at"),
COALESCE(CASE WHEN h."last_output_at" <= sweep."sweep_at" THEN h."last_output_at" END, h."created_at"),
COALESCE(CASE WHEN h."scheduled_retry_at" <= sweep."sweep_at" THEN h."scheduled_retry_at" END, h."created_at"),
COALESCE(CASE WHEN h."finished_at" <= sweep."sweep_at" THEN h."finished_at" END, h."created_at")
)
FROM "run_responsible_user_updated_at_sweeps" AS sweep
WHERE h."company_id" = sweep."company_id"
AND h."updated_at" = sweep."sweep_at";
--> statement-breakpoint
UPDATE "routine_runs" AS rr
SET "updated_at" = GREATEST(
rr."created_at",
COALESCE(CASE WHEN rr."triggered_at" <= sweep."sweep_at" THEN rr."triggered_at" END, rr."created_at"),
COALESCE(CASE WHEN rr."completed_at" <= sweep."sweep_at" THEN rr."completed_at" END, rr."created_at")
)
FROM "run_responsible_user_updated_at_sweeps" AS sweep
WHERE rr."company_id" = sweep."company_id"
AND rr."updated_at" = sweep."sweep_at";
--> statement-breakpoint
UPDATE "routines" AS r
SET "updated_at" = GREATEST(
r."created_at",
COALESCE(CASE WHEN r."last_triggered_at" <= sweep."sweep_at" THEN r."last_triggered_at" END, r."created_at"),
COALESCE(CASE WHEN r."last_enqueued_at" <= sweep."sweep_at" THEN r."last_enqueued_at" END, r."created_at")
)
FROM "run_responsible_user_updated_at_sweeps" AS sweep
WHERE r."company_id" = sweep."company_id"
AND r."updated_at" = sweep."sweep_at";
--> statement-breakpoint
UPDATE "companies" AS c
SET "updated_at" = c."created_at"
FROM "run_responsible_user_updated_at_sweeps" AS sweep
WHERE c."id" = sweep."company_id"
AND c."updated_at" = sweep."sweep_at";
--> statement-breakpoint
DROP TABLE IF EXISTS "run_responsible_user_updated_at_sweeps";

View File

@ -905,13 +905,6 @@
"tag": "0129_agent_api_key_responsible_user",
"breakpoints": true
},
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@ -932,6 +925,20 @@
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