diff --git a/doc/run-log-events.md b/doc/run-log-events.md
index 86ee8499bd..fa98161673 100644
--- a/doc/run-log-events.md
+++ b/doc/run-log-events.md
@@ -113,3 +113,20 @@ The sandbox duplex transport also writes one run-log event as one of its three
 sinks. See the
 [Sandbox Duplex Transport Instrumentation](observability.md#sandbox-duplex-transport-instrumentation)
 section in the Observability contract.
+
+## Native Process Rotation
+
+`native.session.process_rotation` records a controller-initiated close of a
+settled warm session before opening the next run. Its system-stream payload
+contains `reason` (`run_scoped_github_capability` or `configuration_changed`),
+`previousRunId` (nullable), `runId`, `companyId`, `agentId`, `nativeSessionId`,
+and `runnerInstanceId`. It contains no token, environment, path, or credential
+value. The event records rotation intent after the prior process closes; the
+new run must still succeed to establish successful continuation.
+
+A subsequent run uses a fresh process for its own GitHub capability while
+preserving the durable conversation. Warm qualification accepts a changed
+process fingerprint only with a matching system rotation event for that exact
+run transition and a process start inside the new run. Unexpected restarts,
+configuration changes, and conversation, runner-instance or sandbox changes
+remain failures. Same-process warm reuse remains required without a rotation.
diff --git a/doc/sandbox-work-folders.md b/doc/sandbox-work-folders.md
index 3772c0c1a1..da0a0e6742 100644
--- a/doc/sandbox-work-folders.md
+++ b/doc/sandbox-work-folders.md
@@ -372,3 +372,11 @@ appending and after writing. Missing or changed prior content fails without
 repair; repeating the first turn cannot truncate existing work. This avoids
 model-generated byte-count arithmetic while retaining independent per-turn
 persistence checks and the same-sandbox, same-provider continuity requirements.
+
+Native continuation retains its sandbox, runner-instance identity, provider
+conversation, and files across runs. The existing GitHub identity contract
+rotates the provider process for each run-scoped capability. Qualification
+requires an explicit controller rotation event for that exact transition before
+accepting a changed PID/process fingerprint; other process changes still fail.
+See [GitHub execution identity](execution-github-identity.md) and the
+[run-log contract](run-log-events.md#native-process-rotation).
diff --git a/server/src/services/native-runtime/native-session-executor.test.ts b/server/src/services/native-runtime/native-session-executor.test.ts
index 2993743449..28f387acd8 100644
--- a/server/src/services/native-runtime/native-session-executor.test.ts
+++ b/server/src/services/native-runtime/native-session-executor.test.ts
@@ -3521,6 +3521,7 @@ describe("native warm session supervision", () => {
     process.env.PAPERCLIP_RUNNER_STATE_DIR = stateBase;
     process.env.PAPERCLIP_HOME = stateBase;
     const firstClose = vi.fn(async () => undefined);
+    const onEvent = vi.fn(async () => undefined);
     const firstSession = { close: firstClose };
     const first = {
       ...execution,
@@ -3639,6 +3640,7 @@ describe("native warm session supervision", () => {
       } as unknown as Db;
       await executePaperclipNativeSession({
         db: continuationDb,
+        onEvent,
         execution: second,
         runnerEnvironment: useBroker ? { PAPERCLIP_GITHUB_BROKER_TOKEN: "second-run-capability" } : undefined,
         runnerInstanceId: "runner-runnerd-warm",
@@ -3646,9 +3648,28 @@ describe("native warm session supervision", () => {
         runnerExecutionTarget: remoteTarget,
       });
       if (useBroker) {
+        expect(onEvent).toHaveBeenCalledWith({
+          eventType: "native.session.process_rotation",
+          stream: "system",
+          level: "info",
+          message: "Native process rotated for the next run",
+          payload: {
+            reason: "run_scoped_github_capability",
+            previousRunId: first.binding.runId,
+            runId: second.binding.runId,
+            companyId: second.binding.companyId,
+            agentId: second.binding.agentId,
+            nativeSessionId: second.session.normalizedSessionId,
+            runnerInstanceId: "runner-runnerd-warm",
+          },
+        });
+        expect(JSON.stringify(onEvent.mock.calls)).not.toContain("run-capability");
         expect(firstClose).toHaveBeenCalledOnce();
         expect(firstClose).toHaveBeenCalledWith({ reason: "warm native session configuration changed" });
       } else {
+        expect(onEvent).not.toHaveBeenCalledWith(expect.objectContaining({
+          eventType: "native.session.process_rotation",
+        }));
         expect(firstClose).not.toHaveBeenCalled();
         await vi.waitFor(
           () =>
diff --git a/server/src/services/native-runtime/native-session-executor.ts b/server/src/services/native-runtime/native-session-executor.ts
index f5ab407cef..d47352264b 100644
--- a/server/src/services/native-runtime/native-session-executor.ts
+++ b/server/src/services/native-runtime/native-session-executor.ts
@@ -4339,6 +4339,22 @@ async function executePaperclipNativeSessionWithinScope(
           input.execution,
           warmConfigDigest,
         );
+        await input.onEvent?.({
+          eventType: "native.session.process_rotation",
+          stream: "system",
+          level: "info",
+          message: "Native process rotated for the next run",
+          payload: {
+            reason: entry.configDigest === warmConfigDigest && credentialRunChanged
+              ? "run_scoped_github_capability" : "configuration_changed",
+            previousRunId: entry.credentialRunId ?? null,
+            runId: input.execution.binding.runId,
+            companyId: input.execution.binding.companyId,
+            agentId: input.execution.binding.agentId,
+            nativeSessionId: nativeSessionKey(input.execution),
+            runnerInstanceId: input.runnerInstanceId,
+          },
+        });
       } else {
         if (entry.busy) throw new Error("native_session_supervisor_busy");
         entry.busy = true;
diff --git a/tests/runner-e2e/runner.spec.ts b/tests/runner-e2e/runner.spec.ts
index 379cdcd214..11d61d8296 100644
--- a/tests/runner-e2e/runner.spec.ts
+++ b/tests/runner-e2e/runner.spec.ts
@@ -19,7 +19,10 @@ import {
   providerSessionContinuityFailures,
 } from "./run-observations.js";
 import { resolveRunnerE2ESource } from "./source.js";
-import { readWarmWorkspaceFile } from "./warm-workspace.js";
+import {
+  nativeWarmProcessFailures,
+  readWarmWorkspaceFile,
+} from "./warm-workspace.js";
 import {
   isPublicRunnerScreenshotRoute,
   PUBLIC_RUNNER_SCREENSHOT_MARKER,
@@ -143,6 +146,7 @@ interface IssueDocumentRecord {
 }
 interface RunEventRecord {
   seq?: number;
+  stream?: string | null;
   eventType?: string;
   payload?: Record<string, unknown> | null;
   sourceInstanceId?: string | null;
@@ -1980,6 +1984,9 @@ for (const execution of executions) {
           );
         }
         if (execution.profile.generation === "native") {
+          invariantFailures.push(
+            ...nativeWarmProcessFailures(selectedRuns, runEventsByRun),
+          );
           const stableIdentityFields: Array<{
             label: string;
             values: unknown[];
@@ -2000,16 +2007,6 @@ for (const execution of executions) {
               label: "provider session",
               values: selectedRuns.map((candidate) => candidate.sessionIdAfter),
             },
-            {
-              label: "runner pid",
-              values: selectedRuns.map((candidate) => candidate.processPid),
-            },
-            {
-              label: "runner process fingerprint",
-              values: selectedRuns.map(
-                (candidate) => candidate.processStartedAt,
-              ),
-            },
           ];
           for (const { label, values } of stableIdentityFields) {
             if (
diff --git a/tests/runner-e2e/warm-workspace.test.ts b/tests/runner-e2e/warm-workspace.test.ts
index e7674a4e03..24e5e888d2 100644
--- a/tests/runner-e2e/warm-workspace.test.ts
+++ b/tests/runner-e2e/warm-workspace.test.ts
@@ -5,7 +5,10 @@ import path from "node:path";
 import { promisify } from "node:util";
 import { afterEach, describe, expect, it, vi } from "vitest";
 import { daytonaWarmContinuityTask } from "./catalog.js";
-import { readWarmWorkspaceFile } from "./warm-workspace.js";
+import {
+  nativeWarmProcessFailures,
+  readWarmWorkspaceFile,
+} from "./warm-workspace.js";
 
 const temporaryDirectories: string[] = [];
 afterEach(async () => {
@@ -291,3 +294,106 @@ describe("warm workspace persistence observation", () => {
     expect(input.api.request.get).not.toHaveBeenCalled();
   });
 });
+
+function processFixture() {
+  const runs = [0, 1, 2].map((index) => ({
+    id: `run-${index}`,
+    companyId: "company",
+    agentId: "agent",
+    nativeSessionId: "native-session",
+    runnerInstanceId: "runner-instance",
+    processPid: 100 + index,
+    processStartedAt: `2026-09-09T04:0${index}:01Z`,
+    startedAt: `2026-09-09T04:0${index}:00Z`,
+    finishedAt: `2026-09-09T04:0${index}:10Z`,
+  }));
+  const groups = runs.map((run, index) => ({
+    runId: run.id,
+    events:
+      index === 0
+        ? []
+        : [
+            {
+              eventType: "native.session.process_rotation",
+              stream: "system",
+              payload: {
+                reason: "run_scoped_github_capability",
+                previousRunId: runs[index - 1]!.id,
+                runId: run.id,
+                companyId: run.companyId,
+                agentId: run.agentId,
+                nativeSessionId: run.nativeSessionId,
+                runnerInstanceId: run.runnerInstanceId,
+              },
+            },
+          ],
+  }));
+  return { runs, groups };
+}
+
+describe("native warm process continuity", () => {
+  it("requires matching controller events for each run-capability rotation", () => {
+    const { runs, groups } = processFixture();
+    expect(nativeWarmProcessFailures(runs, groups)).toEqual([]);
+  });
+
+  it("retains the same-process requirement without credential rotation", () => {
+    const { runs, groups } = processFixture();
+    for (const run of runs) {
+      run.processPid = runs[0]!.processPid;
+      run.processStartedAt = runs[0]!.processStartedAt;
+    }
+    for (const group of groups) group.events = [];
+    expect(nativeWarmProcessFailures(runs, groups)).toEqual([]);
+    runs[1]!.processPid += 1;
+    expect(nativeWarmProcessFailures(runs, groups)).not.toEqual([]);
+  });
+
+  it.each([
+    "reason",
+    "previousRunId",
+    "runId",
+    "companyId",
+    "agentId",
+    "nativeSessionId",
+    "runnerInstanceId",
+  ] as const)("rejects an unrelated rotation %s", (field) => {
+    const { runs, groups } = processFixture();
+    groups[1]!.events[0]!.payload[field] = "unrelated";
+    expect(nativeWarmProcessFailures(runs, groups)).toHaveLength(1);
+  });
+
+  it.each(["missing", "stdout", "duplicate", "configuration_changed"])(
+    "rejects %s rotation evidence",
+    (kind) => {
+      const { runs, groups } = processFixture();
+      const events = groups[1]!.events;
+      if (kind === "missing") events.pop();
+      if (kind === "stdout") events[0]!.stream = "stdout";
+      if (kind === "duplicate") events.push(events[0]!);
+      if (kind === "configuration_changed") events[0]!.payload.reason = kind;
+      expect(nativeWarmProcessFailures(runs, groups)).toHaveLength(1);
+    },
+  );
+
+  it.each(["invalid", "2026-09-09T04:00:59Z", "2026-09-09T04:01:11Z"])(
+    "rejects a process start outside the new run: %s",
+    (time) => {
+      const { runs, groups } = processFixture();
+      runs[1]!.processStartedAt = time;
+      expect(nativeWarmProcessFailures(runs, groups).length).toBeGreaterThan(0);
+    },
+  );
+
+  it("rejects a claimed rotation that kept the previous process", () => {
+    const { runs, groups } = processFixture();
+    runs[1]!.processPid = runs[0]!.processPid;
+    runs[1]!.processStartedAt = runs[0]!.processStartedAt;
+    expect(nativeWarmProcessFailures(runs, groups)).toHaveLength(1);
+  });
+
+  it("rejects a missing event stream even for stable processes", () => {
+    const { runs } = processFixture();
+    expect(nativeWarmProcessFailures(runs, [])).toHaveLength(3);
+  });
+});
diff --git a/tests/runner-e2e/warm-workspace.ts b/tests/runner-e2e/warm-workspace.ts
index 31b49a6c5c..b8355f780b 100644
--- a/tests/runner-e2e/warm-workspace.ts
+++ b/tests/runner-e2e/warm-workspace.ts
@@ -98,3 +98,84 @@ export async function readWarmWorkspaceFile(input: {
   );
   return { source: "task-cache", content: await response.text() };
 }
+
+/** Stable warm processes or an explicitly recorded run-capability rotation. */
+export function nativeWarmProcessFailures(
+  runs: readonly {
+    id: string;
+    companyId: string;
+    agentId: string;
+    nativeSessionId?: string | null;
+    runnerInstanceId?: string | null;
+    processPid?: number | null;
+    processStartedAt?: string | null;
+    startedAt?: string | null;
+    finishedAt?: string | null;
+  }[],
+  eventGroups: readonly {
+    runId: string;
+    events: readonly {
+      eventType?: string;
+      stream?: string | null;
+      payload?: Record<string, unknown> | null;
+    }[];
+  }[],
+): string[] {
+  const failures: string[] = [];
+  for (const [index, run] of runs.entries()) {
+    if (
+      !Number.isSafeInteger(run.processPid) ||
+      run.processPid! <= 0 ||
+      !Number.isFinite(Date.parse(run.processStartedAt ?? ""))
+    ) {
+      failures.push(`missing native process identity for warm run ${run.id}`);
+      continue;
+    }
+    const group = eventGroups.find((group) => group.runId === run.id);
+    if (!group) {
+      failures.push(`missing native process events for warm run ${run.id}`);
+      continue;
+    }
+    const rotations = group.events.filter(
+      (event) => event.eventType === "native.session.process_rotation",
+    );
+    const previous = runs[index - 1];
+    const sameProcess =
+      !previous ||
+      (previous.processPid === run.processPid &&
+        previous.processStartedAt === run.processStartedAt);
+    if (sameProcess) {
+      if (rotations.length)
+        failures.push(
+          `unexpected native process rotation for warm run ${run.id}`,
+        );
+      continue;
+    }
+    const event = rotations[0];
+    const payload = event?.payload;
+    const started = Date.parse(run.startedAt ?? "");
+    const finished = Date.parse(run.finishedAt ?? "");
+    const processStarted = Date.parse(run.processStartedAt!);
+    if (
+      rotations.length !== 1 ||
+      event?.stream !== "system" ||
+      payload?.reason !== "run_scoped_github_capability" ||
+      payload.previousRunId !== previous.id ||
+      payload.runId !== run.id ||
+      payload.companyId !== run.companyId ||
+      payload.agentId !== run.agentId ||
+      payload.nativeSessionId !== run.nativeSessionId ||
+      payload.runnerInstanceId !== run.runnerInstanceId ||
+      !Number.isFinite(started) ||
+      !Number.isFinite(finished) ||
+      processStarted < started ||
+      processStarted > finished ||
+      processStarted <= Date.parse(previous.processStartedAt ?? "")
+    ) {
+      failures.push(
+        `native warm process changed without a matching run-scoped credential rotation for ${run.id}`,
+      );
+    }
+  }
+  return failures;
+}