refactor(db): add migration authoring checklist (#9122)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Paperclip stores agent work in a PostgreSQL database that evolves via numbered sequential migrations > - Migrations that run large unbounded table scans can block the server's `listen()` call during upgrades, causing multi-minute startup stalls on large databases > - Migration 0126 ran a full sequential scan backfill over `issue_comments` for derived attribution columns — O(n²) due to unindexed `LIMIT`/`OFFSET` batching, pegging CPU for ~5 minutes on a 3–4 M row table > - The safe fix (landed in #9108) replaced 0126 with a new forward-only migration using a partial index + keyset pagination backfill > - But the root cause is the absence of author-time guidance: contributors have no documented rules for writing bounded, indexed migration backfills before they land > - This PR adds a migration authoring checklist to `doc/DATABASE.md` so future contributors have those rules at hand before opening a PR > - The benefit is a durable, discoverable guide that prevents the same class of startup-blocking slowness before it reaches production ## Linked Issues or Issue Description This PR is a documentation follow-on to #9108, which landed the fast 0132 migration fix. It adds author-time guidance that captures the root-cause lesson from that incident. No separate public issue exists for the doc addition; the motivation is described above. Refs #9108 ## What Changed - `doc/DATABASE.md`: Added a **Migration authoring checklist** section with rules for indexed, bounded backfill batches — keyset pagination over `LIMIT`/`OFFSET`, mandatory partial index, idempotent guards, and split-phase schema-vs-data changes. The `check:migrations` CI gate is referenced as the enforcement backstop. ## Verification - `git diff --check -- doc/DATABASE.md` passes (no whitespace errors). - No executable code changed; the checklist is an additive documentation section. ## Risks Low. The change is additive text in `doc/DATABASE.md`. No schema, migration, or code changes. No behavioral diff. ## Model Used Claude claude-sonnet-4-6 (Anthropic, 200 K context, tool use) — used to author the migration authoring checklist and coordinate the PR workflow. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with \`Fixes: #\` / \`Closes #\` / \`Refs #\` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub \`#NNN\` / \`github.com/paperclipai/paperclip\` URLs) - [x] My branch name describes the change (e.g. \`docs/...\`, \`fix/...\`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>
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@ -143,6 +143,19 @@ The database mode is controlled by `DATABASE_URL`:
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Your Drizzle schema (`packages/db/src/schema/`) stays the same regardless of mode.
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## Migration authoring checklist
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The 0126 issue comment attribution backfill showed the failure mode this checklist is meant to prevent: each batch looked for the next rows with an unindexed predicate, so PostgreSQL repeatedly scanned the same table and the migration became O(n²) as the table grew.
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When authoring migrations or one-time backfills:
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- Create the supporting index for the batch predicate before the backfill loop runs.
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- Bound batches by an indexed key, such as an id range or keyset pagination cursor. Do not use `OFFSET` pagination or a query shape that re-scans already-visited rows each batch.
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- Avoid unbounded full-table `UPDATE` or `DELETE` statements. Add a selective predicate and process rows in bounded batches when table size can be large.
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- Use `CREATE INDEX CONCURRENTLY` for large existing tables when the migration can run outside a transaction and must avoid long write locks.
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- Split schema changes, index creation, and data backfill into separate phases so each step has clear locking and rollback behavior.
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- Treat the `check:migrations` CI gate as the enforcement backstop for these rules. If it flags a migration, rewrite the migration or add a suppression comment with the indexed predicate, batch bound, and reason the remaining scan is safe.
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## Resource membership tables
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Paperclip stores current-user sidebar membership state in:
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