fix(skills): deploy validated runtime preparation cache

Apply the production patch from PR #13042 to the existing EC2 application revision without unrelated master changes.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
This commit is contained in:
Dotta 2026-09-08 08:58:15 -05:00
parent 297d8741f5
commit e81bae2402
4 changed files with 305 additions and 15 deletions

View File

@ -1,3 +1,4 @@
import { removeRuntimeSkillCache, resolveRuntimeSkillCache, runtimeSkillCacheSpec } from "./runtime-skill-cache.js";
import { createHash, randomUUID } from "node:crypto";
import { promises as fs } from "node:fs";
import path from "node:path";
@ -3153,6 +3154,7 @@ export function companySkillService(db: Db) {
.delete(companySkills)
.where(eq(companySkills.id, skill.id));
await fs.rm(resolveRuntimeSkillMaterializedPath(companyId, skill), { recursive: true, force: true });
await removeRuntimeSkillCache(resolveManagedSkillsRoot(companyId), skill.id);
}
}
@ -4159,6 +4161,8 @@ export function companySkillService(db: Db) {
{ recursive: true, force: true },
);
await removeRuntimeSkillCache(managedRoot, skill.id);
const renamed = await getById(companyId, skill.id);
if (!renamed) throw notFound("Renamed skill not found");
return { skill: renamed, previousName, previousSlug, previousKey, reassignments: plannedReassignments };
@ -4273,6 +4277,10 @@ export function companySkillService(db: Db) {
const skill = await getById(companyId, skillId);
if (!skill) return null;
return readLoadedSkillFile(skill, relativePath);
}
async function readLoadedSkillFile(skill: CompanySkill, relativePath: string): Promise<CompanySkillFileDetail> {
const normalizedPath = normalizePortablePath(relativePath || "SKILL.md");
const fileEntry = skill.fileInventory.find((entry) => entry.path === normalizedPath);
if (!fileEntry) {
@ -5672,10 +5680,12 @@ export function companySkillService(db: Db) {
let wroteSkillFile = false;
for (const entry of skill.fileInventory) {
const normalizedPath = normalizePortablePath(entry.path);
const detail = await readFile(companyId, skill.id, normalizedPath).catch(() => null);
const detail = await readLoadedSkillFile(skill, normalizedPath);
const content = detail?.content ?? (normalizedPath === "SKILL.md" ? skill.markdown : null);
if (content === null) continue;
const targetPath = path.resolve(skillDir, entry.path);
if (content === null) throw unprocessable("Declared skill file is unavailable");
const resolved = resolveVersionSnapshotPath(skillDir, entry.path);
if (!resolved) throw unprocessable("Invalid skill file path");
const targetPath = resolved.targetPath;
await fs.mkdir(path.dirname(targetPath), { recursive: true });
await fs.writeFile(targetPath, content, "utf8");
if (normalizedPath === "SKILL.md") wroteSkillFile = true;
@ -5817,6 +5827,24 @@ export function companySkillService(db: Db) {
const source = await resolveExistingSkillDirectory(normalizeSkillDirectory(skill));
if (source) return { status: "available", source };
try {
const cache = runtimeSkillCacheSpec(resolveManagedSkillsRoot(companyId), skill);
if (cache) {
const cachedSource = await resolveRuntimeSkillCache(cache,
async (relativePath) => (await readLoadedSkillFile(skill, relativePath)).content,
options.materializeMissing !== false,
async () => (await getById(companyId, skill.id))?.key === skill.key);
return cachedSource
? { status: "available", source: cachedSource }
: { status: "missing", source: path.join(cache.entry, "files"), detail: buildMissingRuntimeSourceDetail(skill) };
}
} catch (error) {
return {
status: "missing", source: resolveRuntimeSkillMaterializedPath(companyId, skill),
detail: `Failed to materialize skill files: ${error instanceof Error ? error.message : String(error)}`,
};
}
if (options.materializeMissing === false) {
const materializedPath = resolveRuntimeSkillMaterializedPath(companyId, skill);
const materializedSource = await resolveExistingSkillDirectory(materializedPath);
@ -6944,6 +6972,7 @@ export function companySkillService(db: Db) {
// Clean up materialized runtime files
await fs.rm(resolveRuntimeSkillMaterializedPath(companyId, skill), { recursive: true, force: true });
await removeRuntimeSkillCache(resolveManagedSkillsRoot(companyId), skill.id);
return skill;
}

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@ -158,7 +158,7 @@ import {
assertManagedProfileRecoveryBinding,
resolvePaperclipRunnerNativeProviderInput,
} from "./native-runtime/provider-profile.js";
import type { NativeRunHistoricalSpan } from "./native-runtime/native-run-trace.js";
import { recordFailedSkillPreparation, type NativeRunHistoricalSpan } from "./native-runtime/native-run-trace.js";
import {
parseNativeExecutionInput,
type NativeExecutionInput,
@ -18916,18 +18916,39 @@ export function heartbeatService(
const runtimeSkillPreference = readPaperclipSkillSyncPreference(
effectiveResolvedConfig,
);
const runtimeSkillEntries = await companySkills.listRuntimeSkillEntries(
agent.companyId,
{
versionSelections: skillVersionSelectionMap(
runtimeSkillPreference.desiredSkillEntries,
const nativeRunnerPreparationSpans: NativeRunHistoricalSpan[] = [];
const skillsPrepareStartedAtMs = Date.now();
const runtimeSkillEntries = await (async () => {
try {
return await companySkills.listRuntimeSkillEntries(
agent.companyId,
{
versionPinsEnabled:
resolvedInstanceSettings.experimental.enableBetaSkills === true,
versionSelections: skillVersionSelectionMap(
runtimeSkillPreference.desiredSkillEntries,
{
versionPinsEnabled:
resolvedInstanceSettings.experimental.enableBetaSkills === true,
},
),
},
),
},
);
);
} catch (error) {
if (agent.adapterType === "paperclip_runner") {
await recordFailedSkillPreparation({
runId: run.id,
startedAtMs: skillsPrepareStartedAtMs,
onEvent: async (event) => { await appendRunEvent(run, event); },
});
}
throw error;
}
})();
nativeRunnerPreparationSpans.push({
name: "skills.prepare",
parentName: "task.prepare",
startedAtMs: skillsPrepareStartedAtMs,
endedAtMs: Date.now(),
});
let runtimeConfig: Record<string, unknown> = {
...effectiveResolvedConfig,
paperclipRuntimeSkills: runtimeSkillEntries,
@ -19611,7 +19632,6 @@ export function heartbeatService(
})
.where(eq(heartbeatRuns.id, run.id));
}
const nativeRunnerPreparationSpans: NativeRunHistoricalSpan[] = [];
const environmentAcquireStartedAtMs = Date.now();
let acquiredEnvironment: Awaited<
ReturnType<typeof envOrchestrator.acquireForRun>

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@ -431,3 +431,22 @@ export function createNativeRunTrace(input: {
}
export type NativeRunTrace = ReturnType<typeof createNativeRunTrace>;
/** Emit preparation failure even when execution aborts before a native session exists. */
export async function recordFailedSkillPreparation(input: {
runId: string;
startedAtMs: number;
onEvent?: NativeRunTraceSink;
traceContext?: StartupTraceContextHandle;
}): Promise<void> {
try {
const trace = createNativeRunTrace(input);
const preparation = trace.start("task.prepare", { parentName: "task.run", startedAtMs: input.startedAtMs });
const endedAtMs = Date.now();
await trace.record({ name: "skills.prepare", parentName: "task.prepare", startedAtMs: input.startedAtMs, endedAtMs, outcome: "failed" });
await trace.end(preparation, { endedAtMs, outcome: "failed" });
await trace.finish("failed");
} catch {
// Diagnostics must not replace the original preparation error.
}
}

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@ -0,0 +1,222 @@
import { createHash, randomUUID } from "node:crypto";
import { constants, promises as fs } from "node:fs";
import os from "node:os";
import path from "node:path";
import type { CompanySkill } from "@paperclipai/shared";
const FORMAT = 1;
const inFlight = new Map<string, Promise<string>>();
const digest = (value: string | Buffer) => createHash("sha256").update(value).digest("hex");
type FileRecord = { path: string; size: number; digest: string };
type CacheSpec = { root: string; entry: string; fingerprint: string; paths: string[] };
function filePath(value: string): string {
const normalized = value.replace(/\\/g, "/");
if (!normalized || normalized.startsWith("/") || /^[a-z]:/i.test(normalized)
|| normalized.split("/").some((part) => !part || part === "." || part === "..")
|| normalized.includes("\0")) throw new Error("Invalid runtime skill file path");
return normalized;
}
export function runtimeSkillCacheRoot(managedRoot: string, skillId: string): string {
if (!/^[a-zA-Z0-9_-]+$/.test(skillId)) throw new Error("Invalid runtime skill ID");
// A sibling of __runtime__: old runtime cleanup cannot remove published revisions.
return path.resolve(managedRoot, `__runtime_cache_v${FORMAT}__`, skillId);
}
export function runtimeSkillCacheSpec(managedRoot: string, skill: CompanySkill): CacheSpec | null {
if ((skill.sourceType === "github" || skill.sourceType === "skills_sh")
&& !/^[a-f0-9]{40}$/i.test(skill.sourceRef ?? "")) return null;
const metadata = skill.metadata ?? {};
const inventory = skill.fileInventory.map((entry) => ({ path: filePath(entry.path), kind: entry.kind }))
.sort((a, b) => a.path.localeCompare(b.path));
const paths = inventory.map((entry) => entry.path);
if (!paths.includes("SKILL.md")) throw new Error("Company skill could not be materialized because its stored SKILL.md copy is missing.");
if (new Set(paths).size !== paths.length) throw new Error("Invalid runtime skill file inventory");
const fingerprint = digest(JSON.stringify({
format: FORMAT, companyId: skill.companyId, skillId: skill.id,
sourceType: skill.sourceType, sourceLocator: skill.sourceLocator, sourceRef: skill.sourceRef,
// These are the only metadata fields used by the source reader. slug is its fallback directory.
source: { owner: metadata.owner, repo: metadata.repo, hostname: metadata.hostname,
ref: skill.sourceRef ? undefined : metadata.ref, repoSkillDir: metadata.repoSkillDir,
fallbackDirectory: typeof metadata.repoSkillDir === "string" ? undefined : skill.slug },
markdown: digest(skill.markdown), inventory,
}));
const root = runtimeSkillCacheRoot(managedRoot, skill.id);
return { root, entry: path.join(root, fingerprint), fingerprint, paths };
}
// Check every ancestor before traversing it, including the configured cache root.
async function assertDirectories(directory: string, trustedRoot: string, create = false): Promise<void> {
const absolute = path.resolve(directory);
let cursor = path.resolve(trustedRoot);
if (!absolute.startsWith(`${cursor}${path.sep}`)) throw new Error("Runtime cache escaped its root");
// Ancestors of the configured storage root may be system aliases (e.g. macOS /var).
if (create) await fs.mkdir(cursor, { recursive: true });
const rootStat = await fs.lstat(cursor);
if (!rootStat.isDirectory() || rootStat.isSymbolicLink()) throw new Error("Unsafe runtime skill storage root");
for (const part of absolute.slice(cursor.length).split(path.sep).filter(Boolean)) {
cursor = path.join(cursor, part);
if (create) await fs.mkdir(cursor).catch((error: NodeJS.ErrnoException) => {
if (error.code !== "EEXIST") throw error;
});
const stat = await fs.lstat(cursor);
if (!stat.isDirectory() || stat.isSymbolicLink()) throw new Error("Unsafe runtime skill cache directory");
}
}
async function readRegularFile(filename: string): Promise<Buffer> {
const handle = await fs.open(filename, constants.O_RDONLY | constants.O_NOFOLLOW);
try {
if (!(await handle.stat()).isFile()) throw new Error("Unsafe runtime skill cache file");
return await handle.readFile();
} finally { await handle.close(); }
}
async function inventory(directory: string, base = ""): Promise<string[]> {
const out: string[] = [];
if ((await fs.lstat(directory)).mode & 0o222) throw new Error("Writable runtime skill cache directory");
for (const entry of await fs.readdir(directory, { withFileTypes: true })) {
const relative = base ? `${base}/${entry.name}` : entry.name;
if (entry.isDirectory()) out.push(...await inventory(path.join(directory, entry.name), relative));
else if (entry.isFile()) out.push(relative);
else throw new Error("Symlink or special file in runtime skill cache");
}
return out.sort();
}
async function matches(spec: CacheSpec, entry = spec.entry): Promise<boolean> {
try {
await assertDirectories(path.join(entry, "files"), path.dirname(path.dirname(spec.root)));
const manifest = JSON.parse((await readRegularFile(path.join(entry, "manifest.json"))).toString("utf8"));
if (manifest.format !== FORMAT || manifest.fingerprint !== spec.fingerprint || !Array.isArray(manifest.files)
|| manifest.files.length !== spec.paths.length) return false;
const actual = await inventory(path.join(entry, "files"));
if (JSON.stringify(actual) !== JSON.stringify([...spec.paths].sort())) return false;
const seen = new Set<string>();
for (const record of manifest.files as FileRecord[]) {
if (!record || typeof record.path !== "string" || filePath(record.path) !== record.path
|| !spec.paths.includes(record.path) || seen.has(record.path)
|| !Number.isSafeInteger(record.size) || record.size < 0 || !/^[a-f0-9]{64}$/.test(record.digest)) return false;
seen.add(record.path);
const content = await readRegularFile(path.join(entry, "files", record.path));
if ((await fs.lstat(path.join(entry, "files", record.path))).mode & 0o222) return false;
if (content.length !== record.size || digest(content) !== record.digest) return false;
}
return true;
} catch { return false; }
}
// Serialize builds and cleanup for one skill across processes as well as callers.
// A hard link publishes complete lock ownership atomically; crashed owners are reported without stealing another publisher’s lock.
async function publishLocked<T>(root: string, fingerprint: string, action: () => Promise<T>): Promise<T> {
const lock = path.join(root, `${fingerprint}.lock`);
const owner = path.join(root, `.owner-${randomUUID()}`);
await fs.writeFile(owner, JSON.stringify({ pid: process.pid, host: os.hostname() }), { flag: "wx" });
let acquired = false;
try {
const deadline = Date.now() + 60_000;
while (!acquired) {
try { await fs.link(owner, lock); acquired = true; }
catch (error) {
if ((error as NodeJS.ErrnoException).code !== "EEXIST") throw error;
const lockContent = await readRegularFile(lock).catch((readError: NodeJS.ErrnoException) => {
if (readError.code === "ENOENT") return null;
throw readError;
});
if (!lockContent) continue;
const holder = JSON.parse(lockContent.toString("utf8"));
if (holder.host === os.hostname() && Number.isSafeInteger(holder.pid) && holder.pid > 0) {
try { process.kill(holder.pid, 0); }
catch (probeError) {
if ((probeError as NodeJS.ErrnoException).code === "ESRCH") {
throw new Error("Runtime skill cache publisher exited; remove its stale publication lock before retrying");
}
}
}
if (Date.now() >= deadline) throw new Error("Runtime skill cache publisher is busy; retry preparation");
await new Promise((resolve) => setTimeout(resolve, 20));
}
}
return await action();
} finally {
if (acquired) await fs.unlink(lock).catch(() => {});
await fs.unlink(owner).catch(() => {});
}
}
async function setTreeMode(directory: string, readonly: boolean): Promise<void> {
const stat = await fs.lstat(directory).catch((error: NodeJS.ErrnoException) => {
if (error.code === "ENOENT") return null;
throw error;
});
if (!stat || stat.isSymbolicLink()) return;
if (!stat.isDirectory()) {
if (readonly && stat.isFile()) await fs.chmod(directory, 0o444);
return;
}
if (!readonly) await fs.chmod(directory, 0o700);
for (const entry of await fs.readdir(directory)) await setTreeMode(path.join(directory, entry), readonly);
if (readonly) await fs.chmod(directory, 0o555);
}
async function removeTree(directory: string): Promise<void> {
await setTreeMode(directory, false);
await fs.rm(directory, { recursive: true, force: true });
}
export async function resolveRuntimeSkillCache(
spec: CacheSpec, read: (relativePath: string) => Promise<string>, materialize = true,
stillInstalled: () => Promise<boolean> = async () => true,
): Promise<string | null> {
if (await matches(spec)) return path.join(spec.entry, "files");
if (!materialize) return null;
const active = inFlight.get(spec.entry);
if (active) return active;
const build = (async () => {
const namespace = path.dirname(spec.root);
await assertDirectories(namespace, path.dirname(namespace), true);
// The lock lives outside the skill directory, so cleanup cannot unlink an active lock.
return publishLocked(namespace, path.basename(spec.root), async () => {
if (!await stillInstalled()) throw new Error("Skill was renamed or removed during preparation");
await assertDirectories(spec.root, path.dirname(namespace), true);
if (await matches(spec)) return path.join(spec.entry, "files");
const staging = await fs.mkdtemp(path.join(spec.root, ".staging-"));
try {
await fs.mkdir(path.join(staging, "files"));
const files: FileRecord[] = [];
for (const relative of spec.paths) {
const content = Buffer.from(await read(relative), "utf8");
const target = path.join(staging, "files", relative);
await fs.mkdir(path.dirname(target), { recursive: true });
await fs.writeFile(target, content, { flag: "wx" });
files.push({ path: relative, size: content.length, digest: digest(content) });
}
await fs.writeFile(path.join(staging, "manifest.json"), JSON.stringify({ format: FORMAT, fingerprint: spec.fingerprint, files }));
await setTreeMode(staging, true);
if (!await matches(spec, staging)) throw new Error("Runtime skill cache validation failed");
// Lifecycle mutations can update the DB while this builder owns the filesystem lock.
if (!await stillInstalled()) throw new Error("Skill was renamed or removed during preparation");
await fs.rename(spec.entry, path.join(spec.root, `.invalid-${spec.fingerprint}-${randomUUID()}`))
.catch((error: NodeJS.ErrnoException) => { if (error.code !== "ENOENT") throw error; });
await fs.rename(staging, spec.entry);
return path.join(spec.entry, "files");
} finally { await removeTree(staging); }
});
})();
inFlight.set(spec.entry, build);
try { return await build; } finally { if (inFlight.get(spec.entry) === build) inFlight.delete(spec.entry); }
}
export async function removeRuntimeSkillCache(managedRoot: string, skillId: string): Promise<void> {
const root = runtimeSkillCacheRoot(managedRoot, skillId);
const namespace = path.dirname(root);
try { await assertDirectories(namespace, managedRoot); }
catch (error) { if ((error as NodeJS.ErrnoException).code === "ENOENT") return; throw error; }
await publishLocked(namespace, skillId, async () => {
try { await assertDirectories(root, managedRoot); }
catch (error) { if ((error as NodeJS.ErrnoException).code === "ENOENT") return; throw error; }
await removeTree(root);
});
}