## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - Operators supervise live agent runs from the issue detail chat
surface.
> - The existing run menu can pause/stop work, but operators sometimes
need to stop the active run and immediately finalize the task outcome.
> - Doing those as separate actions is slower and easier to leave
half-finished.
> - This pull request adds explicit live-run finalization actions to the
issue chat run menu.
> - The benefit is a clearer operator path for stopping a live run and
marking the task done or cancelled in one ordered flow.
## Linked Issues or Issue Description
No public GitHub issue exists for this internal Paperclip task. Internal
task: PAP-10535.
## Subsystem affected
ui/ — React + Vite board UI.
## Problem or motivation
Operators can stop an active run from the issue detail chat, but
finalizing the issue outcome requires a separate status action after the
run is stopped. That extra step makes live-run finalization slower and
easier to leave incomplete.
## Proposed solution
Add explicit issue chat run-menu actions for `Stop and cancel` and `Stop
and done`, where each action cancels the active heartbeat run before
updating the issue status.
## Alternatives considered
Keep the existing two-step flow of cancelling the run first and then
changing issue status separately. That preserves current behavior but
does not solve the operator workflow gap.
## Roadmap alignment
This is a small targeted UI control-plane improvement for supervising
live agent work. It does not duplicate a planned core roadmap item found
in `ROADMAP.md`.
This PR was split from the local `master` branch on June 7, 2026. It
covers the UI-only live-run finalization action. I searched GitHub for
duplicate/related PRs; the results were broader run-control PRs, not
this exact issue-detail menu action.
## What Changed
- Added optional `runFinalizationActions` support to `IssueChatThread`
assistant message run menus.
- Added `Stop and cancel` and `Stop and done` actions on the issue
detail chat tab.
- Each action cancels the active heartbeat run before updating the issue
status.
- Added focused UI coverage to assert cancellation happens before the
status update.
- Addressed Greptile feedback for partial-failure messaging and
duplicate run-state invalidation.
## Verification
- `git diff --check origin/master..HEAD`
- `git diff --check`
- `NODE_ENV=test pnpm exec vitest run ui/src/pages/IssueDetail.test.tsx`
- Storybook screenshot capture for the live-run menu before and after
the finalization actions.
## Screenshots
Before: existing live-run menu only offered the normal stop action.

After: the live-run menu includes `Stop and cancel` and `Stop and done`.

## Risks
- Medium UI behavior risk: the new actions expose faster finalization
controls from the live-run menu. They are gated through the existing
issue detail management surface and still use the existing run cancel
and issue update APIs.
- Low migration risk: no schema, API contract, or dependency changes.
> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.
## Model Used
OpenAI Codex coding agent based on GPT-5, with shell, git, GitHub CLI,
local test execution, and Playwright browser screenshot capture. Exact
hosted model variant and context-window size were not exposed by the
runtime.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>
## Thinking Path
> - Paperclip gives operators a workspace diff plugin so they can
inspect agent changes before review
> - The diff view needs reliable base-ref defaults and controls that
stay usable while scrolling large diffs
> - The working branch mixed those plugin improvements with unrelated
server and cloud work
> - Keeping the workspace diff plugin changes isolated makes them easy
to test and review
> - This pull request polishes the workspace diff plugin controls,
base-ref behavior, and sticky headers
> - The benefit is a more predictable diff review surface for agent
workspaces
## What Changed
- Fixed workspace diff default base-ref resolution.
- Improved split/unified and working-tree/against-ref pane controls.
- Made workspace diff headers stay sticky while scrolling.
- Added a review screenshot at
`screenshots/PAP-9841-workspace-diff.png`.
## Verification
- `pnpm install --frozen-lockfile --ignore-scripts`
- `pnpm --filter @paperclipai/plugin-sdk build`
- `pnpm --filter @paperclipai/plugin-workspace-diff exec vitest run
tests/plugin.spec.ts`
- Result: 9 tests passed.
## Risks
- UI-only plugin branch with low data risk.
- The default base-ref inference should be reviewed against unusual
worktree/upstream combinations.
> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.
## Model Used
- OpenAI Codex, GPT-5-based coding agent with local shell/git/tool use.
Exact hosted model ID and context-window size are not exposed by the
local Paperclip adapter runtime.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge
---------
Co-authored-by: Paperclip <noreply@paperclip.ing>