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Dotta 1dceee9a4e
fix(runner): persist warm Daytona workspaces (#12901) 
## Thinking Path

> - Paperclip manages AI agent work and the execution state for each
task.
> - Remote agents run in sandbox environments such as Daytona.
> - Daytona keeps files while a sandbox is stopped, but deletion removes
those files.
> - Runner Codex did not copy successful remote workspace changes back
to the host workspace.
> - A warm sandbox could therefore hide data loss until Daytona replaced
or deleted the sandbox.
> - This pull request makes the host workspace durable after every
successful turn and keeps verified reusable sandboxes warm.
> - The benefit is reliable multi-turn work across warm reuse, restart,
stop, and sandbox replacement.

## Linked Issues or Issue Description

**What happened?**

A successful native Codex turn in Daytona could leave workspace changes
only in the remote sandbox. A later warm turn appeared to work because
it reused that filesystem. A replacement sandbox could start from stale
host data and lose the successful changes.

**Expected behavior**

Paperclip must merge each successful remote turn into the authoritative
host workspace before it completes the run. A verified warm lease may
reuse its remote files. A replacement lease must reconstruct the exact
durable workspace seed.

**Steps to reproduce**

1. Run Codex in a reusable Daytona environment.
2. Write a file during one successful turn.
3. Replace the Daytona sandbox before the next turn.
4. Observe that the next turn can start without the prior file on the
unpatched code.

Related remote workspace foundation: #10070.

## What Changed

- Added explicit `host_current`, `durable_seed`, and `adopt_remote`
workspace preparation modes.
- Added atomic, versioned native workspace descriptors and seed archives
under `PAPERCLIP_HOME`.
- Added real native sandbox export and three-way host merge before
terminal result completion.
- Added workspace-only recovery after a proposed result. Recovery does
not submit another provider turn or consume the provider retry budget.
- Added fail-closed handling when a sandbox with unexported changes is
gone.
- Kept healthy reusable Daytona sandboxes started for legacy Codex and
Runner Codex.
- Kept the Runner Codex process and provider session across verified
warm turns.
- Added the paid `daytona-warm-continuity` browser suite. It contains
exactly the legacy Codex and Runner Codex cells. Each cell performs
three measured turns.
- Documented `pnpm test:e2e:runner -- --suite daytona-warm-continuity`.
No package script was added.
- Added no database migration. The metadata format is backward
compatible and idempotent.

## Verification

- `pnpm typecheck`
- `pnpm test:e2e:runner:unit` — 114 passed
- Native workspace, finalizer, session, and environment tests — 232
passed
- Daytona provider tests — 150 passed
- Workspace staging and merge tests — 98 passed
- Runner transport tests — 63 passed
- Legacy Codex restore tests — 5 passed
- Rust format and compile checks pass through root typecheck
- The paid Daytona suite was not run locally because the required
Daytona, OpenAI, and immutable image credentials are not present.

## Risks

- The main risk is an incorrect workspace identity or merge after a
crash. Durable descriptors bind the run, workspace, lease, provider
lease, local root, remote root, and baseline digest. Ambiguous evidence
fails closed.
- The host merge may conflict with concurrent host edits. The existing
three-way merge and exclusion rules handle this case and surface
failures.
- A deleted sandbox cannot recover unexported bytes. Paperclip now
blocks with `workspace_sync_out_unrecoverable` instead of reporting
success or rerunning the provider.
- There is no database migration. Descriptor writes and recovery are
atomic and idempotent.

## Model Used

OpenAI Codex with GPT-5. The run used agentic reasoning, repository
inspection, code execution, test execution, Git, and GitHub CLI tools.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
 		2026-09-05 13:00:57 -05:00
..
src fix(runner): persist warm Daytona workspaces (#12901) 2026-09-05 13:00:57 -05:00
DIRECTORY-CONSTRAINT-FINDINGS.md
…
README.md
…
package.json
…
pnpm-lock.yaml fix(runner-e2e): prepare frozen Daytona plugin dependencies (#12791) 2026-09-03 16:31:22 -05:00
tsconfig.json
…
vitest.config.ts feat: add Grok device login to the sandbox login panel (#12469) 2026-08-28 21:48:34 -07:00

README.md

@paperclipai/plugin-daytona

Published Daytona sandbox provider plugin for Paperclip.

This package lives in the Paperclip monorepo, but it is intentionally excluded from the root pnpm workspace and shaped to publish and install like a standalone npm package. That lets operators install it from the Plugins page by package name without introducing root lockfile churn for Daytona's SDK dependencies.

Install

From a Paperclip instance, install:

@paperclipai/plugin-daytona

The host plugin installer runs npm install into the managed plugin directory, so transitive dependencies such as @daytonaio/sdk are pulled in during installation.

Configuration

Configure Daytona from Instance Settings -> Environments, not from the plugin's plugin page.

  • Put the Daytona API key on the sandbox environment itself.
  • When you save an environment, Paperclip stores pasted API keys as company secrets.
  • DAYTONA_API_KEY remains an optional host-level fallback when an environment omits the key.
  • Optional apiUrl and target settings map directly to the Daytona SDK/client configuration. If apiUrl is omitted, the Daytona SDK uses its default endpoint.

Notes:

  • The current published Daytona SDK package is @daytonaio/sdk.
  • The driver supports both snapshot-based and image-based sandbox creation. If both are set, validation rejects the config as ambiguous.
  • Reusable leases map to Daytona stop/start semantics. Non-reusable leases are deleted on release.

Local development

cd packages/plugins/sandbox-providers/daytona
pnpm install --ignore-workspace --no-lockfile
pnpm build
pnpm test
pnpm typecheck

These commands assume the repo root has already been installed once so the local @paperclipai/plugin-sdk workspace package is available to the compiler during development.

Package layout

  • src/manifest.ts declares the sandbox-provider driver metadata
  • src/plugin.ts implements the environment lifecycle hooks
  • paperclipPlugin.manifest and paperclipPlugin.worker point the host at the built plugin entrypoints in dist/