A job id can outlive its payload hash. BullMQ still returns an entry for
it with empty `data`, so `normalize(job.data.filepath)` threw and took the
whole response with it.
`fetchJobsWithStates()` includes failed jobs, and failed jobs are retained
deliberately, so one orphan made GET /api/downloads/jobs throw on every
call, permanently. Content Explorer polls that endpoint every ~3s, so the
symptom was a 500 loop and a page that never loaded. It survived restarts
and only cleared by editing Redis by hand.
Drop entries with no usable payload at the source, and guard both
normalize() calls (the pmtiles-extract map had the same pattern). With no
payload there is nothing to render anyway.
Seen on NOMAD3 running rc.3: 93 occurrences in 15 minutes.
Closes#1190
Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
* feat(drug-reference): offline FDA drug labels, conditions, and remedies
Adds an offline medical-reference feature with three coupled layers:
- Drug Reference: full-text search over openFDA drug-label indications,
a detail page per label, and a side-by-side single-drug comparison view.
A two-phase background pipeline downloads the openFDA label parts to the
storage volume (resumable) and ingests them into the search table.
- Conditions ("When to use what"): a curated spine of first-aid situations
that maps each situation to matching OTC drugs, each linking back to its
Drug Reference detail page.
- Curated remedies: hand-authored natural and home-remedy entries drawn from
US-government public-domain sources (NCCIH, CDC, MedlinePlus, FDA), shown
with their source links and the same safety disclaimers as the rest of the
feature.
The drug-reference and conditions layers are intentionally coupled: the drug
detail page shows the situations a drug treats, and the conditions controller
reads the same drug_labels table.
Safety surfaces ship as written. The amber SafetyBanner ("informational only,
not medical advice, not an FDA endorsement, not a drug-interaction checker, in
an emergency call emergency services") renders on the condition pages and the
search page; the detail and comparison pages carry their own "not a cross-drug
interaction checker" callout; and every page carries the openFDA CC0 source
citation and no-FDA-affiliation footer.
Wiring on this branch:
- start/routes.ts: the /drug-reference and /conditions page GETs plus their
/api/* groups.
- commands/queue/work.ts: the drug-download and drug-ingest queues, both at
concurrency 1. The two drug queues get a per-queue stall override
(lockDuration 1_800_000, maxStalledCount 3) because each part is one long
stream; every other queue keeps the existing 300000 default.
- inertia/pages/home.tsx: Drug Reference and "When to use what" tiles. The
icon and display_order are a starting point, open to change.
- types/kv_store.ts: the two drugReference.* keys the pipeline reads and writes.
- package.json: yauzl and stream-json (plus their @types), used by the ingest
job to stream the label JSON out of the downloaded zips.
The app reads the conditions and remedy data from the compiled TS constants in
app/data/; the repo-root collections/*.json files are the browseable mirrors.
The natural-remedies standalone test reads collections/natural_remedies.json to
assert the two stay in sync, so that file is also a test fixture.
The four standalone tests pass (drug_interactions, drug_ingest_status,
conditions, natural_remedies). tsc reports no errors in the feature code.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* chore(drug-reference): drop a fork-internal comment reference
* fix(drug-reference): address review — defer FULLTEXT, fallback remedies prop, strip fork refs
- migration: wrap the FULLTEXT ALTER in this.defer so it runs after the
deferred createTable (was silently swallowed, index never created)
- controller: add remedies:[] to the index() error fallback (required prop)
- strip fork-internal issue/spec references from ported comments
- tsconfig: exclude tests/standalone (node --experimental-strip-types only)
- correct the varchar(768) byte-math comment; extend remedy-spine test
* fix(drug-reference): make the interaction comparison readable at five drugs
The comparison view laid its columns out on an equal-fraction CSS grid
(repeat(N, minmax(0, 1fr))), so each added drug shrank every column; at the
five-drug maximum the FDA interaction text was squeezed into unreadable slivers.
Lay the columns out with flex instead: full-width and stacked on phones, then
fixed-width columns that scroll sideways from the sm: breakpoint up, so they
never shrink below a readable width. Theme the columns with the same palette as
the rest of the page (they were on stock gray), and give the headers a fixed
min-height so columns line up when drug names wrap.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* feat(collections): route a 'dataset' tier resource to the drug pipeline
Add an optional `type` discriminator to SpecResource ('zim' | 'dataset',
absent == 'zim'), so the tier installer can carry a DB-ingested resource
alongside ZIM files. ZimService.downloadCategoryTier branches on it: a
'dataset' resource dispatches the existing FDA download+ingest pipeline
instead of RunDownloadJob, guarded against duplicate dispatch by the drug
ingest status. Every existing manifest entry has no `type` and keeps the
exact ZIM path.
Widen InstalledResource.resource_type to include 'dataset' and exclude
dataset rows from the ZIM/map catalog-update scan (datasets aren't
filename-versioned; their freshness path is separate). No dataset rows are
written yet: the InstalledResource 'dataset' row on ingest-ready, the
manifest entry, install-gating, and the downloads-aggregator integration
are follow-up commits.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* feat(drug-reference): rework into an opt-in medicine-standard tier dataset
Reshapes the offline FDA drug reference from a built-in feature into curated
content installed by selecting the Medicine / Standard tier, per maintainer
direction.
- install-state: the ingest writes an installed_resources 'dataset' row on
ready (version = the openFDA export_date), threaded installer to download to
ingest; the tier-status math and the home-tile gate read it. Manual ingests
write no row, so install-state stays tied to the curated path.
- manifest: declare the dataset in the medicine-standard tier (runtime fetches
the remote manifest, so this also needs to land upstream).
- install-gating: the drug-reference home tiles render only when installed.
- uninstall: DrugReferenceService.uninstall() stops the two drug queues, deletes
the on-disk parts, truncates drug_labels (schema kept), clears the KV markers,
and drops the install row. Best-effort, logged, scoped to drug data only.
- downloads: the download phase reports the canonical {percent, downloadedBytes,
totalBytes} shape as one drug-data card in the Active Downloads aggregator with
cancel/remove; the heavy ingest stays in the IngestStatus surface with an
Indexing handoff on the card.
- auto-update: a daily DrugAutoUpdateJob compares the manifest export_date and
re-downloads when newer, gated on installed + no active job.
typecheck clean; the drug standalone suites pass. Three points are flagged in
code for the maintainer: the InstalledResource 'dataset' approach, the tier
home, and the export_date string format.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* fix(downloads): keep the drug download card live across all parts
The Active Downloads card filtered to the deterministic jobId, but the
download's continuations run under auto-generated jobIds (only part 0 uses the
deterministic one). So the card tracked part 0 and then vanished while parts
2..N kept downloading. The queue is concurrency 1, so collapse to whichever
single part is in flight and report the deterministic jobId: one card tracks
aggregate progress through the whole download and cancel/remove still routes.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* feat(drug-reference): co-locate a persistent safety note with affirmative remedy guidance
Add RemedySafetyNote at the head of every natural-remedy section — the two on
Drug Reference and the one on "When to use what" — so the "informational only,
not medical advice, seek real medical care in an emergency" framing appears with
the guidance itself, not only in the page-top banner. Replaces the terse
per-section caveat with the same amber alert language as SafetyBanner.
Addresses the upstream #1040 review request that the disclaimer be unmistakable
and present wherever affirmative self-care guidance appears, not a one-time banner.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* fix(drug-reference): fold dataset freshness into the content-auto-update path
The drug dataset auto-updated on its own daily cron that ignored the
contentAutoUpdate.* master switch, so it would refresh even with content
auto-update turned off, and it didn't ride the content-update path the way
ZIMs and maps do.
Move the export_date freshness/apply orchestration onto
DrugReferenceService.attemptAutoUpdate(), add
ContentAutoUpdateService.attemptDrugDataset() gated on the same enabled +
window config, and have the hourly ContentAutoUpdateJob drive both. Retire
the standalone DrugAutoUpdateJob. The ZIM/map attempt() path is unchanged.
Addresses the upstream #1040 request to wire the openFDA export_date check
into the content updater so the dataset updates alongside ZIMs and maps.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* feat(drug-reference): strengthen the remedy note to consult a clinician before combining with meds
Widen the affirmative-remedy safety note from "talk to a clinician before use"
to explicitly cover using a remedy AND combining one with a medication the user
already takes — the interaction case is the higher-risk path for an off-grid
user self-treating.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* feat(drug-reference): gate affirmative remedy content behind an off-by-default flag
Add drugReference.remediesEnabled (default off), independent of the tier
install. When off, the server emits no remedy data at any boundary — the
drug-reference page prop, conditions show, and the /api/conditions/drugs
situation search — and the "Natural" filter is hidden, so installing the
medicine-standard tier lights up the verbatim FDA label search and the
condition-to-OTC matching but not the hand-authored self-care and herbal
sections. No user-facing toggle: it is flipped on after a clinician content-pass.
Implements the upstream #1040 split-by-risk request: the regulated label content
ships with the tier; the authored remedy guidance stays gated until sign-off.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Co-authored-by: Jake Turner <52841588+jakeaturner@users.noreply.github.com>
Previously, failed downloads showed only an alert icon and a dismiss (X)
button — the user had no way to retry or reach the resource page without
manually re-adding the download and finding the source URL elsewhere.
This commit adds:
- POST /api/downloads/jobs/:jobId/retry endpoint (controller + service)
- retryDownloadJob() API method on the frontend
- Failed-state UI in ActiveDownloads.tsx now shows:
- Retry button (re-dispatches the original download job)
- 'Download page' external link (when the download URL is an HTTP(S) URL)
- Loading state on the retry button while the request is in-flight
- Screenshots documenting before/after UI
Co-authored-by: eizus <hello@cdr.xyz>
* feat(maps): add regional map downloads via go-pmtiles extract
* address Copilot review feedback on PR #780
- auto-refresh preflight on selection/maxzoom change with 400ms debounce and
requestId stale-safety so the confirm button no longer requires a two-step
"Estimate Size" -> "Start Download" dance
- safeUpdateProgress helper replaces fire-and-forget updateProgress().catch()
pattern so cancelled-job errors (code -1) can't surface as unhandled rejections
- gate world basemap source on worldBasemapReady - when ensureWorldBasemap()
fails we already delete world.pmtiles, so emitting the source was producing
404s on every tile request
- verify go-pmtiles binary SHA256 at image build time; upstream doesn't ship a
checksums file so per-arch hashes are pinned as build args with a regenerate
note when bumping PMTILES_VERSION
Adds a cancel button to in-progress Ollama model downloads and unifies
the Active Model Downloads card layout with the Active Downloads card
used for ZIMs, maps, and pmtiles (byte counts, progress bar, live speed,
status indicator).
Closes#676.
* fix(downloads): increase retry attempts and backoff for large file downloads
* fix download retry config and abort handling
* use abort reason to detect user-initiated cancels
* feat(downloads): rich progress, friendly names, cancel, and live status
Redesign the Active Downloads UI with four improvements:
- Rich progress: BullMQ jobs now report downloadedBytes/totalBytes instead
of just a percentage, showing "2.3 GB / 5.1 GB" instead of "78% / 100%"
- Friendly names: dispatch title metadata from curated categories, Content
Explorer library, Wikipedia selector, and map collections
- Cancel button: Redis-based cross-process abort signal lets users cancel
active downloads with file cleanup. Confirmation step prevents accidents.
- Live status indicator: green pulsing dot with transfer speed for active
downloads, orange stall warning after 60s of no data, gray dot for queued
Backward compatible with in-flight jobs that have integer-only progress.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* fix(downloads): fix cancel, dismiss, speed, and retry bugs
- Speed indicator: only set prevBytesRef on first observation to prevent
intermediate re-renders from inflating the calculated speed
- Cancel: throw UnrecoverableError on abort to prevent BullMQ retries
- Dismiss: remove stale BullMQ lock before job.remove() so cancelled
jobs can actually be dismissed
- Retry: add getActiveByUrl() helper that checks job state before
blocking re-download, auto-cleans terminal jobs
- Wikipedia: reset selection status to failed on cancel so the
"downloading" state doesn't persist
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
* feat(downloads): improve cancellation logic and surface true BullMQ job states
---------
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Jake Turner <jturner@cosmistack.com>
Failed download jobs persist in BullMQ forever with no way to clear
them, leaving stale error notifications in Content Explorer and Easy
Setup. Adds a dismiss button (X) on failed download cards that removes
the job from the queue via a new DELETE endpoint.
- Backend: DELETE /api/downloads/jobs/:jobId endpoint
- Frontend: X button on failed download cards with immediate refresh
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Three bugs caused downloads to hang, disappear, or leave stuck spinners:
1. Wikipedia downloads that failed never updated the DB status from 'downloading',
leaving the spinner stuck forever. Now the worker's failed handler marks them as failed.
2. No stall detection on streaming downloads - if data stopped flowing mid-download,
the job hung indefinitely. Added a 5-minute stall timer that triggers retry.
3. Failed jobs were invisible to users since only waiting/active/delayed states were
queried. Now failed jobs appear with error indicators in the download list.
Closes#364, closes#216
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Items actively downloading now appear at the top of the download list
instead of the bottom. Sorts by progress percentage descending so the
item furthest along is always first, and queued items (0%) are last.
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
chriscrosstalk
caweis
jarvisxyz
0xGlitch
Chris Sherwood
Jake Turner