initial commmit

This commit is contained in:
chrispen 2020-09-22 19:23:47 +01:00
parent 16ba3da07c
commit ca9f7b8c55
31 changed files with 26497 additions and 0 deletions

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config/jupyter.env Normal file
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JUPYTER_TOKEN=yourpassword

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config/rstudio.env Normal file
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PASSWORD=yourpassword

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{
"cells": [],
"metadata": {},
"nbformat": 4,
"nbformat_minor": 4
}

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{
"context_id": "69B24582",
"error_handler_type": "traceback"
}

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{}

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activeClientUrl="http://localhost:8787/"
portToken="70723c39f556"

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1600796387862.000000

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none

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4.0.2

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/usr/local/lib/R

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abend="1"
active-client-id="4598bf55-192e-4530-868c-9ab3810fcef0"

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data/Untitled.ipynb Normal file
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{
"cells": [
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import pkg_resources\n",
"dists = [d for d in pkg_resources.working_set]\n",
"dists"
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {},
"outputs": [],
"source": [
"# This program adds two numbers\n",
"\n",
"num1 = 1.5\n",
"num2 = 6.3\n",
"\n",
"# Add two numbers\n",
"sum = num1 + num2\n",
"\n",
"# Display the sum\n",
"print('The sum of {0} and {1} is {2}'.format(num1, num2, sum))"
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"[zipp 3.1.0 (/opt/conda/lib/python3.8/site-packages),\n",
" zict 2.0.0 (/opt/conda/lib/python3.8/site-packages),\n",
" xlrd 1.2.0 (/opt/conda/lib/python3.8/site-packages),\n",
" widgetsnbextension 3.5.1 (/opt/conda/lib/python3.8/site-packages),\n",
" wheel 0.35.1 (/opt/conda/lib/python3.8/site-packages),\n",
" webencodings 0.5.1 (/opt/conda/lib/python3.8/site-packages),\n",
" wcwidth 0.2.5 (/opt/conda/lib/python3.8/site-packages),\n",
" vincent 0.4.4 (/opt/conda/lib/python3.8/site-packages),\n",
" urllib3 1.25.10 (/opt/conda/lib/python3.8/site-packages),\n",
" tzlocal 2.1 (/opt/conda/lib/python3.8/site-packages),\n",
" typing-extensions 3.7.4.2 (/opt/conda/lib/python3.8/site-packages),\n",
" traitlets 5.0.4 (/opt/conda/lib/python3.8/site-packages),\n",
" tqdm 4.49.0 (/opt/conda/lib/python3.8/site-packages),\n",
" tornado 6.0.4 (/opt/conda/lib/python3.8/site-packages),\n",
" toolz 0.10.0 (/opt/conda/lib/python3.8/site-packages),\n",
" tifffile 2020.9.3 (/opt/conda/lib/python3.8/site-packages),\n",
" threadpoolctl 2.1.0 (/opt/conda/lib/python3.8/site-packages),\n",
" testpath 0.4.4 (/opt/conda/lib/python3.8/site-packages),\n",
" terminado 0.8.3 (/opt/conda/lib/python3.8/site-packages),\n",
" tblib 1.6.0 (/opt/conda/lib/python3.8/site-packages),\n",
" tables 3.6.1 (/opt/conda/lib/python3.8/site-packages),\n",
" sympy 1.6.2 (/opt/conda/lib/python3.8/site-packages),\n",
" statsmodels 0.11.1 (/opt/conda/lib/python3.8/site-packages),\n",
" SQLAlchemy 1.3.19 (/opt/conda/lib/python3.8/site-packages),\n",
" soupsieve 2.0.1 (/opt/conda/lib/python3.8/site-packages),\n",
" sortedcontainers 2.2.2 (/opt/conda/lib/python3.8/site-packages),\n",
" six 1.15.0 (/opt/conda/lib/python3.8/site-packages),\n",
" simplegeneric 0.8.1 (/opt/conda/lib/python3.8/site-packages),\n",
" setuptools 49.6.0.post20200917 (/opt/conda/lib/python3.8/site-packages),\n",
" Send2Trash 1.5.0 (/opt/conda/lib/python3.8/site-packages),\n",
" seaborn 0.10.1 (/opt/conda/lib/python3.8/site-packages),\n",
" scipy 1.5.2 (/opt/conda/lib/python3.8/site-packages),\n",
" scikit-learn 0.23.2 (/opt/conda/lib/python3.8/site-packages),\n",
" scikit-image 0.17.2 (/opt/conda/lib/python3.8/site-packages),\n",
" ruamel.yaml 0.16.12 (/opt/conda/lib/python3.8/site-packages),\n",
" ruamel.yaml.clib 0.2.2 (/opt/conda/lib/python3.8/site-packages),\n",
" ruamel-yaml-conda 0.15.80 (/opt/conda/lib/python3.8/site-packages),\n",
" rpy2 3.1.0 (/opt/conda/lib/python3.8/site-packages),\n",
" requests 2.24.0 (/opt/conda/lib/python3.8/site-packages),\n",
" pyzmq 19.0.2 (/opt/conda/lib/python3.8/site-packages),\n",
" PyYAML 5.3.1 (/opt/conda/lib/python3.8/site-packages),\n",
" PyWavelets 1.1.1 (/opt/conda/lib/python3.8/site-packages),\n",
" pytz 2020.1 (/opt/conda/lib/python3.8/site-packages),\n",
" python-json-logger 0.1.11 (/opt/conda/lib/python3.8/site-packages),\n",
" python-editor 1.0.4 (/opt/conda/lib/python3.8/site-packages),\n",
" python-dateutil 2.8.1 (/opt/conda/lib/python3.8/site-packages),\n",
" PySocks 1.7.1 (/opt/conda/lib/python3.8/site-packages),\n",
" pyrsistent 0.17.3 (/opt/conda/lib/python3.8/site-packages),\n",
" pyparsing 2.4.7 (/opt/conda/lib/python3.8/site-packages),\n",
" pyOpenSSL 19.1.0 (/opt/conda/lib/python3.8/site-packages),\n",
" PyJWT 1.7.1 (/opt/conda/lib/python3.8/site-packages),\n",
" Pygments 2.7.1 (/opt/conda/lib/python3.8/site-packages),\n",
" pycurl 7.43.0.5 (/opt/conda/lib/python3.8/site-packages),\n",
" pycparser 2.20 (/opt/conda/lib/python3.8/site-packages),\n",
" pycosat 0.6.3 (/opt/conda/lib/python3.8/site-packages),\n",
" ptyprocess 0.6.0 (/opt/conda/lib/python3.8/site-packages),\n",
" psutil 5.7.2 (/opt/conda/lib/python3.8/site-packages),\n",
" protobuf 3.12.4 (/opt/conda/lib/python3.8/site-packages),\n",
" prompt-toolkit 3.0.7 (/opt/conda/lib/python3.8/site-packages),\n",
" prometheus-client 0.8.0 (/opt/conda/lib/python3.8/site-packages),\n",
" pip 20.2.3 (/opt/conda/lib/python3.8/site-packages),\n",
" Pillow 7.2.0 (/opt/conda/lib/python3.8/site-packages),\n",
" pickleshare 0.7.5 (/opt/conda/lib/python3.8/site-packages),\n",
" pexpect 4.8.0 (/opt/conda/lib/python3.8/site-packages),\n",
" patsy 0.5.1 (/opt/conda/lib/python3.8/site-packages),\n",
" partd 1.1.0 (/opt/conda/lib/python3.8/site-packages),\n",
" parso 0.7.1 (/opt/conda/lib/python3.8/site-packages),\n",
" pandocfilters 1.4.2 (/opt/conda/lib/python3.8/site-packages),\n",
" pandas 1.1.2 (/opt/conda/lib/python3.8/site-packages),\n",
" pamela 1.0.0 (/opt/conda/lib/python3.8/site-packages),\n",
" packaging 20.4 (/opt/conda/lib/python3.8/site-packages),\n",
" olefile 0.46 (/opt/conda/lib/python3.8/site-packages),\n",
" oauthlib 3.0.1 (/opt/conda/lib/python3.8/site-packages),\n",
" numpy 1.19.1 (/opt/conda/lib/python3.8/site-packages),\n",
" numexpr 2.7.1 (/opt/conda/lib/python3.8/site-packages),\n",
" numba 0.48.0 (/opt/conda/lib/python3.8/site-packages),\n",
" notebook 6.1.3 (/opt/conda/lib/python3.8/site-packages),\n",
" networkx 2.5 (/opt/conda/lib/python3.8/site-packages),\n",
" nest-asyncio 1.4.0 (/opt/conda/lib/python3.8/site-packages),\n",
" nbformat 5.0.7 (/opt/conda/lib/python3.8/site-packages),\n",
" nbconvert 6.0.3 (/opt/conda/lib/python3.8/site-packages),\n",
" nbclient 0.5.0 (/opt/conda/lib/python3.8/site-packages),\n",
" msgpack 1.0.0 (/opt/conda/lib/python3.8/site-packages),\n",
" mpmath 1.1.0 (/opt/conda/lib/python3.8/site-packages),\n",
" mock 4.0.2 (/opt/conda/lib/python3.8/site-packages),\n",
" mistune 0.8.4 (/opt/conda/lib/python3.8/site-packages),\n",
" matplotlib 3.2.2 (/opt/conda/lib/python3.8/site-packages),\n",
" MarkupSafe 1.1.1 (/opt/conda/lib/python3.8/site-packages),\n",
" Mako 1.1.3 (/opt/conda/lib/python3.8/site-packages),\n",
" locket 0.2.0 (/opt/conda/lib/python3.8/site-packages),\n",
" llvmlite 0.31.0 (/opt/conda/lib/python3.8/site-packages),\n",
" kiwisolver 1.2.0 (/opt/conda/lib/python3.8/site-packages),\n",
" jupyterlab 2.2.5 (/opt/conda/lib/python3.8/site-packages),\n",
" jupyterlab-server 1.2.0 (/opt/conda/lib/python3.8/site-packages),\n",
" jupyterlab-pygments 0.1.1 (/opt/conda/lib/python3.8/site-packages),\n",
" jupyterhub 1.1.0 (/opt/conda/lib/python3.8/site-packages),\n",
" jupyter-telemetry 0.0.5 (/opt/conda/lib/python3.8/site-packages),\n",
" jupyter-core 4.6.3 (/opt/conda/lib/python3.8/site-packages),\n",
" jupyter-client 6.1.7 (/opt/conda/lib/python3.8/site-packages),\n",
" jsonschema 3.2.0 (/opt/conda/lib/python3.8/site-packages),\n",
" json5 0.9.4 (/opt/conda/lib/python3.8/site-packages),\n",
" joblib 0.16.0 (/opt/conda/lib/python3.8/site-packages),\n",
" Jinja2 2.11.2 (/opt/conda/lib/python3.8/site-packages),\n",
" jedi 0.17.2 (/opt/conda/lib/python3.8/site-packages),\n",
" ipywidgets 7.5.1 (/opt/conda/lib/python3.8/site-packages),\n",
" ipython 7.18.1 (/opt/conda/lib/python3.8/site-packages),\n",
" ipython-genutils 0.2.0 (/opt/conda/lib/python3.8/site-packages),\n",
" ipympl 0.5.8 (/opt/conda/lib/python3.8/site-packages),\n",
" ipykernel 5.3.4 (/opt/conda/lib/python3.8/site-packages),\n",
" importlib-metadata 1.7.0 (/opt/conda/lib/python3.8/site-packages),\n",
" imageio 2.9.0 (/opt/conda/lib/python3.8/site-packages),\n",
" imagecodecs 2020.5.30 (/opt/conda/lib/python3.8/site-packages),\n",
" idna 2.10 (/opt/conda/lib/python3.8/site-packages),\n",
" HeapDict 1.0.1 (/opt/conda/lib/python3.8/site-packages),\n",
" h5py 2.10.0 (/opt/conda/lib/python3.8/site-packages),\n",
" gmpy2 2.1.0b1 (/opt/conda/lib/python3.8/site-packages),\n",
" fsspec 0.8.2 (/opt/conda/lib/python3.8/site-packages),\n",
" fastcache 1.1.0 (/opt/conda/lib/python3.8/site-packages),\n",
" entrypoints 0.3 (/opt/conda/lib/python3.8/site-packages),\n",
" distributed 2.27.0 (/opt/conda/lib/python3.8/site-packages),\n",
" dill 0.3.2 (/opt/conda/lib/python3.8/site-packages),\n",
" defusedxml 0.6.0 (/opt/conda/lib/python3.8/site-packages),\n",
" decorator 4.4.2 (/opt/conda/lib/python3.8/site-packages),\n",
" dask 2.20.0 (/opt/conda/lib/python3.8/site-packages),\n",
" cytoolz 0.10.1 (/opt/conda/lib/python3.8/site-packages),\n",
" Cython 0.29.21 (/opt/conda/lib/python3.8/site-packages),\n",
" cycler 0.10.0 (/opt/conda/lib/python3.8/site-packages),\n",
" cryptography 3.1 (/opt/conda/lib/python3.8/site-packages),\n",
" conda 4.8.3 (/opt/conda/lib/python3.8/site-packages),\n",
" conda-package-handling 1.6.1 (/opt/conda/lib/python3.8/site-packages),\n",
" cloudpickle 1.5.0 (/opt/conda/lib/python3.8/site-packages),\n",
" click 7.1.2 (/opt/conda/lib/python3.8/site-packages),\n",
" chardet 3.0.4 (/opt/conda/lib/python3.8/site-packages),\n",
" cffi 1.14.3 (/opt/conda/lib/python3.8/site-packages),\n",
" certipy 0.1.3 (/opt/conda/lib/python3.8/site-packages),\n",
" certifi 2020.6.20 (/opt/conda/lib/python3.8/site-packages),\n",
" brotlipy 0.7.0 (/opt/conda/lib/python3.8/site-packages),\n",
" Bottleneck 1.3.2 (/opt/conda/lib/python3.8/site-packages),\n",
" bokeh 2.1.1 (/opt/conda/lib/python3.8/site-packages),\n",
" blinker 1.4 (/opt/conda/lib/python3.8/site-packages),\n",
" bleach 3.2.1 (/opt/conda/lib/python3.8/site-packages),\n",
" beautifulsoup4 4.9.1 (/opt/conda/lib/python3.8/site-packages),\n",
" backports.functools-lru-cache 1.6.1 (/opt/conda/lib/python3.8/site-packages),\n",
" backcall 0.2.0 (/opt/conda/lib/python3.8/site-packages),\n",
" attrs 20.2.0 (/opt/conda/lib/python3.8/site-packages),\n",
" async-generator 1.10 (/opt/conda/lib/python3.8/site-packages),\n",
" argon2-cffi 20.1.0 (/opt/conda/lib/python3.8/site-packages),\n",
" alembic 1.4.3 (/opt/conda/lib/python3.8/site-packages)]"
]
},
"execution_count": 9,
"metadata": {},
"output_type": "execute_result"
}
],
"source": []
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.5"
}
},
"nbformat": 4,
"nbformat_minor": 4
}

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data/nass_CDS.csv Normal file

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docker-compose.yml Normal file
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version: "3.8"
# All available services
services:
# Computation
jupyter:
container_name: "jupyter_notebook"
image: "jupyter/datascience-notebook"
restart: "always"
env_file:
- ./config/jupyter.env
volumes:
- ./data:/home/jovyan/work
ports:
- 8888:8888
rstudio:
container_name: "rstudio"
image: "rocker/rstudio"
restart: "always"
env_file:
- ./config/rstudio.env
volumes:
- ./data:/home/rstudio
ports:
- 8787:8787